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73

10. Richard Sternberg,

On the Roles of Repetitive DNA Elements in the Context of

a Unified Genomic-Epigenetic System,

Annals of the New York Academy of Sciences, 981

(2002): 154

88.

11. Ibid.

12. Sternberg,

On the Roles of Repetitive DNA Elements in the Context of a

Unified Genomic-Epigenetic System,

154

88.

13. Tammy A. Morrish, Nicolas Gilbert, Jeremy S. Myers, Bethaney J. Vincent,

Thomas D. Stamato, Guillermo E. Taccioli, Mark A. Batzer, and John V. Moran,

DNA

repair mediated by endonuclease-independent LINE-1 retrotransposition,

Nature

Genetics, 31 (June, 2002): 159

65.

14. Galit Lev-Maor, Rotem Sorek, Noam Shomron, and Gil Ast,

The birth of an

alternatively spliced exon: 3

splice-site selection in Alu exons,

Science, 300 (May

23, 2003): 1288

91; Wojciech Makalowski,

Not junk after all,

Science, 300 (May 23,

2003): 1246

47.

15. Nurit Paz-Yaacova, Erez Y. Levanonc, Eviatar Nevod, Yaron Kinare, Alon

Harmelinf, Jasmine Jacob-Hirscha, Ninette Amariglioa, Eli Eisenbergg, and Gideon

Rechavi,

Adenosine-to-inosine RNA editing shapes transcriptome diversity in

primates,

Proceedings of the National Academy of Sciences USA,

107 (July 6, 2010): 12174

79.

16. Morrish et al.,

DNA repair mediated by endonuclease-independent LINE-1

retrotransposition,

159

65; Annie Tremblay, Maria Jasin, and Pierre Chartrand,

A

Double-Strand Break in a Chromosomal LINE Element Can Be Repaired by Gene Conversion

with Various Endogenous LINE Elements in Mouse Cells,

Molecular and Cellular Biology,

20 (January, 2000): 54

60; Ulf Grawunder, Matthias Wilm, Xiantuo Wu, Peter Kulesza,

Thomas E. Wilson, Matthias Mann, and Michael R. Lieber,

Activity of DNAligase IV

stimulated by complex formation with XRCC4 protein in mammalian cells,

Nature,

388 (July 31, 1997): 492

95; Thomas E. Wilson, Ulf Grawunder, and Michael R. Lieber,

Yeast DNA ligase IV mediates non-homologous DNA end joining,

Nature, 388 (July 31,

1997): 495

98.

17. Richard Sternberg and James A. Shapiro,

How repeated retroelements format

genome function,

Cytogenetic and Genome Research, 110 (2005): 108

16.

18. Jeffrey S. Han, Suzanne T. Szak, and Jef D. Boeke,

Transcriptional

disruption by the L1 retrotransposon and implications for mammalian transcriptomes,

Nature, 429 (May 20, 2004): 268

74; Bethany A. Janowski, Kenneth E. Huffman, Jacob C.

Schwartz, Rosalyn Ram, Daniel Hardy, DavidS. Shames, John D. Minna, and David R.

Corey,

Inhibiting gene expression at transcription start sites in chromosomal DNA

with antigene RNAs,

Nature Chemical Biology, 1 (September, 2005): 216

22; J. A.

Goodrich, and J. F. Kugel,

Non-coding-RNA regulators of RNA polymerase II

transcription,

Nature Reviews Molecular and Cell Biology, 7 (August, 2006): 612

16;

L.C. Li, S. T. Okino, H. Zhao, H., D. Pookot, R. F. Place, S. Urakami, H. Enokida, and