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68

Wu, Peter Kulesza, Thomas E. Wilson, Matthias Mann, and Michael R. Lieber,

Activity of DNAligase IV

stimulated by complex formation with XRCC4 protein in mammalian cells,

Nature, 388 (July 31, 1997): 492

95; Thomas E. Wilson, Ulf Grawunder, and Michael

R. Lieber,

Yeast DNA ligase IV mediates non-homologous DNA end joining,

Nature,

388 (July 31, 1997): 495

98.

17. Richard Sternberg and James A. Shapiro,

How repeated retroelements format

genome function,

Cytogenetic and Genome Research, 110 (2005): 108

16.

18. Jeffrey S. Han, Suzanne T. Szak, and Jef D. Boeke,

Transcriptional

disruption by the L1 retrotransposon and implications for mammalian

transcriptomes,

Nature, 429 (May 20, 2004): 268

74; Bethany A. Janowski, Kenneth

E. Huffman, Jacob C. Schwartz, Rosalyn Ram, Daniel Hardy, DavidS. Shames, John D.

Minna, and David R. Corey,

Inhibiting gene expression at transcription start sites

in chromosomal DNA with antigene RNAs,

Nature Chemical Biology, 1 (September,

2005): 216

22; J. A. Goodrich, and J. F. Kugel,

Non-coding-RNA regulators of RNA

polymerase II transcription,

Nature Reviews Molecular and Cell Biology, 7 (August,

2006): 612

16; L.C. Li, S. T. Okino, H. Zhao, H., D. Pookot, R. F. Place, S.

Urakami, H. Enokida, and R. Dahiya,

Small dsRNAs induce transcriptional activation

in human cells,

Proceedings of the National Academy of Sciences USA, 103 (November

14, 2006): 17337

42; A. Pagano, M. Castelnuovo, F. Tortelli, R. Ferrari, G. Dieci,

and R. Cancedda,

New small nuclear RNA gene-like transcriptional units as sources

of regulatory transcripts,

PLoS Genetics, 3(February, 2007): e1; L. N. van de

Lagemaat, J. R. Landry, D. L. Mager, and P. Medstrand,

Transposable elements in

mammals promote regulatory variation and diversification of genes with specialized

functions,

Trends in Genetics, 19 (October, 2003): 530

36; S. R. Donnelly, T. E.

Hawkins, and S. E. Moss,

A Conserved nuclear element with a role in mammalian gene

regulation,

Human Molecular Genetics, 8 (1999): 1723

28; C. A. Dunn, P. Medstrand,

and D. L. Mager,

An endogenous retroviral long terminal repeat is the dominant

promoter for human B1,3-galactosyltransferase 5 in thecolon,

Proceedings of the

National Academy of Sciences USA, 100 (October 28, 2003):12841

46; B. Burgess-

Beusse, C. Farrell, M. Gaszner, M. Litt, V. Mutskov, F. Recillas-Targa, M. Simpson,

A. West, and G. Felsenfeld,

The insulation of genes from external enhancers and

silencing chromatin,

Proceedingsof the National Academy of Sciences USA, 99

(December 10, 2002): 16433

37; P. Medstrand, Josette-Ren

é

e Landry, and D. L. Mager,

Long Terminal Repeats Are Used as Alternative Promoters for the Endothelin B

Receptor and Apolipoprotein C-I Genes in Humans,

Journal of Biological Chemistry,

276 (January 19, 2001): 1896

1903; L. Mari

ñ

o-Ram

í

reza, K.C.Lewisb, D. Landsmana,

and I.K. Jordan,

Transposable elements donate lineage-specific regulatory

sequences to host genomes,

Cytogenetic and Genome Research, 110 (2005):333

41.

19. S. Henikoff, K. Ahmad, and H. S. Malik

The Centromere Paradox: Stable

Inheritance with Rapidly Evolving DNA,

Science, 293 (August 10, 2001):1098

1102;

C. Bell, A. G. West, and G. Felsenfeld,

Insulators and Boundaries: Versatile

Regulatory Elements in the Eukaryotic Genome,

Science, 291

(January 19, 2001): 447

50; M.-L. Pardue & P. G. DeBaryshe,

Drosophila

telomeres: two transposable elements with important roles in chromosomes,

Genetica, 107 (1999): 189

96; S. Henikoff,

Heterochromatin function in complex

genomes,

Biochimica et Biophysica Acta, 1470 (February, 2000):

O1

O8; L. M.Figueiredo, L. H. Freitas-Junior, E. Bottius, Jean-Christophe

Olivo-Marin, and A. Scherf,

A central role for Plasmodium falciparum subtelomeric

regions in spatial positioning and telomere length regulation,

The EMBO Journal,